>I am adding a VFP project to Vault from the VFP IDE and want the directory structure in the repository to automatically mirror that in the disk but don;t know how to go about it. VFP files referenced in my project live in subdirectories of 5 top level directories. The pjx/pjt files are two levels down from the disk root, and and named differently than any directory.
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>Any suggestions?

Don't bother. The integration of VFP IDE with any source control is buggy and the API is generally always more trouble than it's worth. I played with this several iterations few years ago, and just gave it up. Besides, if you edit something in an external editor, or in VFP without the project open, you seem to get into some kind of trouble - don't remember what exactly, because I never got that far.

Use the Vault client on the side. Much easier. Just create a folder below $, name it whatever you want, and map it to your pjx folder, then select the files to put into vault (and files to ignore). Then have some discipline with it. After every build, label the whole project tree with the build number, so you can revert if need be. And that's about it.