>>>When I run this
>>>
>>>

>>>SELECT *
>>>    FROM (SELECT DISTINCT s.GroupId, e.EmployeeID, IIf(e.Certified Is Null,0,1) AS cert_complete 
>>>    FROM ((Stores AS s 
>>>    INNER JOIN EmployeeStores AS es ON s.StoreId=es.StoreId) 
>>>    INNER JOIN Employees AS e ON es.EmployeeId=e.EmployeeID) 
>>>    INNER JOIN Titles AS t ON e.TitleId=t.TitleId WHERE t.IsManager=True AND e.IsActive=True)  AS d
>>>

>>>
>>>It doesn't appear to be returning active employees. I'm getting back EmployeeId as part of the result set, and no inactive id's appear in the set.
>>
>>Ok, so it does work correctly.
>
>Yes it does, except when I run the whole thing I still get Active employees.

You're supposed to only get Active Employees with the IsActive = 'true' condition.