>I'm always working on several VFP projects at once. They are all the same code, but different branches.
>
>So, I'm in VFP and I'm in the correct folder and I've opened the correct PJX and then I launch GoFish and for the 'Scope' it usually pulls up the last PJX I was in and not the ActiveProject which is what I want.
>
>So, there I am GoFishing on the wrong code and even opening the wrong code and making changes to it. Usually, at some point I realize I'm in the wrong project, but this is just plain frustrating.
>
>Is this a bug in GoFish or is there a setting I'm missing?

It should work as explained by Tamar.
If you have your code in different branches with different FOXUSERS, there is an option to use a different GoFish for each of you branches (iow different foxuser.dbf), buried in Advanced options, you must activate "Allow Code References like work" first, restart GF, activate "Local Settings", restart GF.

If you couldn't solve the problem, please create an issue at https://github.com/VFPX/GoFish/issues