I Have an idea for you involving the use of a small piece of code to dig through a project and try to force a rewrite of component files:

FUNCTION ForceFlushEndWithT
IF ! 'CLSHEAP'$UPPER(SET('PROCEDURE'))
   SET PROCEDURE TO ClsHeap ADDITIVE
ENDIF
CLOSE ALL
DECLARE INTEGER GetActiveWindow IN WIN32API
DECLARE INTEGER SHFileOperation IN SHELL32.DLL STRING @ LPSHFILEOPSTRUCT
SET PROCEDURE TO CLSHEAP ADDITIVE
oHeap = CREATEOBJ('Heap')
cSource = FULLPATH(CURDIR())
cDest = cSource + SYS(2015) + '\'
MKDIR (cDest)
#DEFINE FO_COPY 2
#DEFINE FO_DELETE 3
#DEFINE FOF_NOCONFIRMATION 0x10    &&  Don't prompt the user.
#DEFINE FOF_NOCONFIRMMKDIR 0x200   &&  don't confirm making any needed dirs
#DEFINE FOF_ALLOWUNDO 0x40         &&  permit undo action
cSourceString = cSource + '.??T' + CHR(0) + CHR(0)
cDestString = cDest + CHR(0) + CHR(0)
nStringBase = oHeap.AllocBlob(cSourceString+cDestString)
cFileOpStruct = NumToDWORD(GetActiveWindow()) + ;
                NumToDWORD(FO_COPY) + ;
                NumToDWORD(nStringBase) + ;
                NumToDWORD(nStringBase + LEN(cSourceString)) + ;
                NumToDWORD(FOF_NOCONFIRMATION + FOF_NOCONFIRMMKDIR) + ;
                CHR(0) + ;
                NumToDWORD(0) + ;
                NumToDWORD(0)
=SHFileOperation(cFileOpStruct)
cSourceString = cDest + '.??T' + CHR(0) + CHR(0)
cDestString = cSource + CHR(0) + CHR(0)
nStringBase = oHeap.AllocBlob(cSourceString+cDestString)
cFileOpStruct = NumToDWORD(GetActiveWindow()) + ;
                NumToDWORD(FO_COPY) + ;
                NumToDWORD(nStringBase) + ;
                NumToDWORD(nStringBase + LEN(cSourceString)) + ;
                NumToDWORD(FOF_NOCONFIRMATION + FOF_NOCONFIRMMKDIR + FOF_ALLOWUNDO) + ;
                CHR(0) + ;
                NumToDWORD(0) + ;
                NumToDWORD(0)
=SHFileOperation(cFileOpStruct)
cSourceString = cDest + '.??T' + CHR(0) + CHR(0)
cDestString = CHR(0) + CHR(0)
nStringBase = oHeap.AllocBlob(cSourceString+cDestString)
cFileOpStruct = NumToDWORD(GetActiveWindow()) + ;
                NumToDWORD(FO_DELETE) + ;
                NumToDWORD(nStringBase) + ;
                NumToDWORD(nStringBase + LEN(cSourceString)) + ;
                NumToDWORD(FOF_NOCONFIRMATION + FOF_NOCONFIRMMKDIR + FOF_ALLOWUNDO) + ;
                CHR(0) + ;
                NumToDWORD(0) + ;
                NumToDWORD(0)
=SHFileOperation(cFileOpStruct)
RMDIR (cDest)
oHeap = ''
RETURN

I'm not guarenteeing error checking to prevent dumb naming errors, or that you have enough disk space or anything of that type; this is strictly a kludge I've put together that will bulk copy, recopy, delete the temp and remove the temp dir. Anyone who wants to bitch is welcome to go play in traffic; I don't need the bullshit. It works reasonably safely, and if it's a matter of copying and saving, it might help.